Skip to contents

Create define PDF file for submission of pharmacometric data files

Source: R/define_tbl.r
define_tbl.Rd

This function creates the define.pdf file necessary for esubmission.

Usage

define_tbl(
  attr = NULL,
  ret = "dfrm",
  capt = "Dataset define form",
  align = "lp{3cm}lp{8cm}",
  outnm = NULL,
  orientation = "portrait",
  size = "\\footnotesize",
  src = NULL,
  ...
)

Arguments

attr

list with datasets attributes

ret

a character vector to define what kind of output should be returned (either "dfrm", "tbl", "file")

capt

character with the caption of the table

align

alignment of the table passed to general_tbl

outnm

character with the name of the tex file to generate and compile (e.g. define.tex)

orientation

character the page orientation in case a file is to be returned (can be either 'portrait' or 'landscape')

size

character with font size as for the table general_tbl

src

object that holds information regarding the source (e.g. get_log()$srce_nfo ), if NULL an attempt is made to get it from the environment

...

additional arguments passed to general_tbl

Value

a data frame, code for table or nothing in case a PDF file is created

Author

Richard Hooijmaijers

Examples


xmpl   <- system.file("example/Attr.Template.xlsx",package = "amp.dm")
attrl  <- attr_xls(xmpl)
define_tbl(attrl)
#>         Data.Item                Description  Unit
#> STUDYID   STUDYID           Study identifier     -
#> ID             ID  Unique subject identifier     -
#> TRT           TRT              Treatment arm     -
#> CMT           CMT                Compartment     -
#> AMT           AMT        Amount administered    mg
#> STIME       STIME             Scheduled time     h
#> TIME         TIME                       Time     h
#> TAFD         TAFD      Time after first dose     h
#> TALD         TALD       Time after last dose     h
#> DV             DV       Concentration Theoph ng/mL
#> EVID         EVID                   Event ID     -
#> MDV           MDV                 missing DV     -
#> CNTRY       CNTRY                    Country     -
#> SEX           SEX                     Gender     -
#> AGE           AGE                        Age     y
#> WEIGHT     WEIGHT                     Weight    kg
#> HEIGHT     HEIGHT                     Height     m
#> BMI           BMI            Body mass index kg/m2
#> FLAGPK     FLAGPK Flag for type of PK record     -
#>                                                         Remark
#> STUDYID                                                      -
#> ID                                                           -
#> TRT         1 = 300 mg theoph form 1, 2 = 300 mg theoph form 2
#> CMT            1 = Dosing compartment, 2 = Central compartment
#> AMT                             Original dose units set to mg 
#> STIME                                                        -
#> TIME                                                         -
#> TAFD                                                         -
#> TALD                                                         -
#> DV                                                           -
#> EVID                        0 = Observations, 1 = Dosing event
#> MDV       0 = Other, 1 = Dose records and missing observations
#> CNTRY                       1 = BEL, 2 = FRA, 3 = GER, 4 = NED
#> SEX                                       0 = Male, 1 = Female
#> AGE                                                          -
#> WEIGHT                                                       -
#> HEIGHT                                                       -
#> BMI                                                          -
#> FLAGPK   1 = Missing PK, 2 = PK below LOQ, 3 = Valid PK sample